PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JK8QK
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 268aa    MW: 30102.1 Da    PI: 8.784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JK8QKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002189111123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Aradu.JK8QK  89 FSCNYCQRKFYSSQALGGHQNAH 111
                  89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-686116No hitNo description
PROSITE profilePS5015711.42789116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDLQTLENLK KSSSKNKDQD DDQEVKENTT STVLQLDLSL SSNDESRTKQ ELNLLNFLDP  60
NSSENSSDST QEEEEGNKNK NHEMEHRTFS CNYCQRKFYS SQALGGHQNA HKRERTLARR  120
GHHKSPSSSS SSMVDFGYRF SPSFSSSSSS NGSYNKPLGI QLHSMINKPS SQPPFFAMTC  180
RENGWQRQKL YLDSHPANRK LNSNNGLESE SPSSMAVFDG SGGVPRLGKF HPTKLVTQGF  240
GGYWFGSVSH LNSKHENKLQ KLDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015938079.10.0PREDICTED: zinc finger protein 3-like
TrEMBLA0A151R5P81e-64A0A151R5P8_CAJCA; Zinc finger protein 3
TrEMBLI1KVJ92e-64I1KVJ9_SOYBN; Uncharacterized protein
STRINGGLYMA08G23210.15e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-24C2H2 family protein